The seventh pandemic of cholera in Europe revisited by microbial genomics
Nat Commun Oprea M, Njamkepo E, Cristea D, Zhukova A, Clark CG, Kravetz AN, Monakhova E, Ciontea AS, Cojocaru R, Rauzier J, Damian M,...
top of page
Oct 21, 2020
The seventh pandemic of cholera in Europe revisited by microbial genomics
Published in Nat Commun Oprea M, Njamkepo E, Cristea D, Zhukova A, Clark CG, Kravetz AN, Monakhova E, Ciontea AS, Cojocaru R, Rauzier J,...
Oct 20, 2020
Human intestinal models to study interactions between intestine and microbes
Open Biol Aguilar-Rojas A, Olivo-Marin J.-C., Guillen N. Implementations of suitable in vitro cell culture systems of the human...
Oct 20, 2020
Human intestinal models to study interactions between intestine and microbes
Published in Open Biol Aguilar-Rojas A, Olivo-Marin J.-C., Guillen N. Implementations of suitable in vitro cell culture systems of the...
Sep 28, 2020
Lockdown impact on COVID-19 epidemics in regions across metropolitan France
Published in The Lancet Simon Cauchemez, Cécile Tran Kiem, Juliette Paireau, Patrick Rolland, Arnaud Fontanet Lockdowns have been used by...
Sep 24, 2020
Molecular Characterization of Dengue Type 2 Outbreak in Pacific Islands Countries and Territories
Viruses Inizan C, O'Connor O, Worwor G, Cabemaiwai T, Grignon JC, Girault G, Minier M, Prot M, Ballan V, Pakoa G Jr, Grangeon JP, Guyant...
Sep 20, 2020
Genuage: visualizing and analyzing multidimensional point cloud data in virtual reality
Nature Methods Thomas Blanc, Mohamed El Beheiry, Clément Caporal, Jean-Baptiste Masson, Bassam Hajj. The quantity of experimentally...
Sep 6, 2020
Disk Compression of k-mer Sets
WABI Rahman A, Chikhi R, Medvedev P K-mer based methods have become prevalent in many areas of bioinformatics. In applications such as...
Aug 24, 2020
Graph-Theoretic Barcode Ordering Model for Linked-Reads
WABI 2020 Dufresne Y, Sun C, Marijon P, Lavenier D, Chauve C, Chikhi R Considering a set of intervals on the real line, an interval...
Jul 23, 2020
DIVA: Natural Navigation Inside 3D Images Using Virtual Reality
J Mol Biol El Beheiry M, Godard C, Caporal C, Marcon V, Ostertag C, Sliti O, Doutreligne S, Fournier S, Hajj B, Dahan M, JB Masson. As...
Jul 21, 2020
Generalizing the Statistical Analysis of Objects’ Spatial Coupling in Bioimaging
IEEE Signal Processing Letters Mukherjee S, Gonzalez-Gomez C, Danglot L, Lagache T, Olivo-Marin JC We introduce a novel paradigm for...
Jul 9, 2020
Estimating the burden of SARS-CoV-2 in France
Science Henrik Salje, Cécile Tran Kiem, Noémie Lefrancq, Noémie Courtejoie, Paolo Bosetti, Juliette Paireau, Alessio Andronico,...
Jul 1, 2020
Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020
Euro Surveill Gámbaro F, Behillil S, Baidaliuk A, Donati F, Albert M, Alexandru A, Vanpeene M, Bizard M, Brisebarre A, Barbet M, Derrar...
Jul 1, 2020
ARIAweb: a server for automated NMR structure calculation
Nucleic Acids Res Fabrice Allain, Fabien Mareuil, Hervé Ménager, Michael Nilges, Benjamin Bardiaux. Nuclear magnetic resonance (NMR)...
Jun 30, 2020
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets
Bioinformatics Marchet C, Iqbal Z, Gautheret D, Salson M, Chikhi R. Motivation: In this work we present REINDEER, a novel computational...
Jun 30, 2020
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing
Brief Bioinform Lima L, Marchet C, Caboche S, da Silva C, Istace B, Aury JM, Touzet H, Chikhi R Motivation Nanopore long-read sequencing...
Jun 11, 2020
Phylogenetic background and habitat drive the genetic diversification of E. Coli
PLoS Genet Touchon M, Perrin A, de Sousa JAM, Vangchhia B, Burn S, O’Brien CL, Denamur E, Gordon D, Rocha EPC Escherichia coli is mostly...
Jun 4, 2020
Reconstructing Mayaro virus circulation in French Guiana shows frequent spillovers
Nat Commun Hozé N, Salje H, Rousset D, Fritzell C, Vanhomwegen J, Bailly S, Najm M, Enfissi A, Manuguerra JC, Flamand C, Cauchemez S...
May 31, 2020
Yacrd and fpa: upstream tools for long-read genome assembly
Bioinformatics Pierre Marijon, Rayan Chikhi, Jean-Stéphane Varré Motivation: Genome assembly is increasingly performed on long,...
May 31, 2020
Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde
Emerg Infect Dis Faye O, de Lourdes Monteiro M, Vrancken B, Prot M, Lequime S, Diarra M, Ndiaye O, Valdez T, Tavarez S, Ramos J, Lda...
bottom of page