Monitoring sick leave data for early detection of influenza outbreaks
BMC Infect Dis Duchemin T, Bastard J, Ante-Testard PA, Assab R, Daouda OS, Duval A, Garsi JP, Lounissi R, Nekkab N, Neynaud H, Smith D...
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Jan 7, 2021
Impact of mass testing during an epidemic rebound of SARS-CoV-2: a modelling study
Euro Surveill Bosetti P, Tran Kiem C, Yazdanpanah Y, Fontanet A, Lina B, Colizza V, Cauchemez S We used a mathematical model to evaluate...
Jan 4, 2021
Clustering and reverse transcription of HIV-1 genomes in nuclear niches of macrophages
The EMBO J Rensen E, Mueller F, Scoca V, Parmar J, Souque P, Zimmer C, Di Nunzio F In order to replicate, human immunodeficiency virus...
Dec 8, 2020
Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase
Biomolecules Samson C, Legrand P, Tekpinar M, Rozenski J, Abramov M, Holliger P, Pinheiro VB, Herdewijn P, Delarue M Archaeal DNA...
Dec 1, 2020
Data structures based on kmers for querying large collections of sequencing data sets
Genome Res Marchet C, Boucher C, Puglisi SJ, Medvedev P, Salson M, Chikhi R High-throughput sequencing data sets are usually deposited...
Nov 23, 2020
Identifying neural substrates of competitive interactions and sequence transitions
Plos Genetics Jean-Baptiste Masson, Francois Laurent, Albert Cardona, Chloe Barre, Nicolas Skatchkovsky, Marta Zlatic, Tihana Jovanic...
Nov 23, 2020
Cell Tracking Profiler: a user-driven analysis framework for evaluating 4D live cell imaging data
J Cell Sci Mitchell C, Caroff L, Solis-Lemus JA, Reyes-Aldasoro CC, Warburton F, de Chaumont F, Dufour A, Dallongeville S, Olivo-Marin...
Nov 5, 2020
A multi-disciplinary comparison of great ape gut microbiota in a central African forest
Sci Rep Narat V, Amato KR, Ranger N, Salmona M, Mercier-Delarue S, Rupp S, Ambata P, Njouom R, Simon F, Giles-Vernick, LeGoff J...
Nov 2, 2020
Age-specific mortality and immunity patterns of SARS-CoV-2
Nature O’Driscoll M, Dos Santos GR, Wang L, Cummings DAT, Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H Estimating the size of...
Nov 2, 2020
Age-specific mortality and immunity patterns of SARS-CoV-2
Published in Nature O’Driscoll M, Dos Santos GR, Wang L, Cummings DAT, Azman AS, Paireau J, Fontanet A, Cauchemez S, Salje H Estimating...
Oct 26, 2020
E-cadherin focuses protrusion formation at the front of migrating cells by impeding actin flow
Nat Commun Grimaldi C, Schumacher I, Boquet-Pujadas A, Tarbashevich K, Vos B, Bandemer J, Schick J, Aalto A, Olivo-Marin JC, Betz T, Raz...
Oct 21, 2020
The seventh pandemic of cholera in Europe revisited by microbial genomics
Nat Commun Oprea M, Njamkepo E, Cristea D, Zhukova A, Clark CG, Kravetz AN, Monakhova E, Ciontea AS, Cojocaru R, Rauzier J, Damian M,...
Oct 21, 2020
The seventh pandemic of cholera in Europe revisited by microbial genomics
Published in Nat Commun Oprea M, Njamkepo E, Cristea D, Zhukova A, Clark CG, Kravetz AN, Monakhova E, Ciontea AS, Cojocaru R, Rauzier J,...
Oct 20, 2020
Human intestinal models to study interactions between intestine and microbes
Open Biol Aguilar-Rojas A, Olivo-Marin J.-C., Guillen N. Implementations of suitable in vitro cell culture systems of the human...
Oct 20, 2020
Human intestinal models to study interactions between intestine and microbes
Published in Open Biol Aguilar-Rojas A, Olivo-Marin J.-C., Guillen N. Implementations of suitable in vitro cell culture systems of the...
Sep 28, 2020
Lockdown impact on COVID-19 epidemics in regions across metropolitan France
Published in The Lancet Simon Cauchemez, Cécile Tran Kiem, Juliette Paireau, Patrick Rolland, Arnaud Fontanet Lockdowns have been used by...
Sep 24, 2020
Molecular Characterization of Dengue Type 2 Outbreak in Pacific Islands Countries and Territories
Viruses Inizan C, O'Connor O, Worwor G, Cabemaiwai T, Grignon JC, Girault G, Minier M, Prot M, Ballan V, Pakoa G Jr, Grangeon JP, Guyant...
Sep 20, 2020
Genuage: visualizing and analyzing multidimensional point cloud data in virtual reality
Nature Methods Thomas Blanc, Mohamed El Beheiry, Clément Caporal, Jean-Baptiste Masson, Bassam Hajj. The quantity of experimentally...
Sep 6, 2020
Disk Compression of k-mer Sets
WABI Rahman A, Chikhi R, Medvedev P K-mer based methods have become prevalent in many areas of bioinformatics. In applications such as...
Aug 24, 2020
Graph-Theoretic Barcode Ordering Model for Linked-Reads
WABI 2020 Dufresne Y, Sun C, Marijon P, Lavenier D, Chauve C, Chikhi R Considering a set of intervals on the real line, an interval...
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