Genomics | Inception

May 24, 2023

A journey toward the diversity of people affected by autism

Thomas Bourgeron, the INCEPTION coordinator, has recently published a book entitled "Des gènes, des synapses, des autismes" on his...

Mar 24, 2023

MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes

Peer Community Journal Néron B, Denise R, Coluzzi C, Touchon M, Rocha EP, Abby SS. Complex cellular functions are usually encoded by a...

Feb 27, 2023

Yersiniomics, a Multi-Omics Interactive Database for Yersinia Species.

Microbiol Spectr. Lê-Bury P, Druart K, Savin C, Lechat P, Mas Fiol G, Matondo M, Bécavin C, Dussurget O, Pizarro-Cerdá J. The genus...

Dec 22, 2022

SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings

Full title: SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads...

Oct 18, 2022

Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling

mBio Felipe-Ruiz A, Marina A, Rocha EPC In Firmicutes, important processes such as competence development, sporulation, virulence, and...

Sep 29, 2022

Dynamics of SARS-CoV-2 lineages in French Guiana in 2020-2021

Full title: Dynamics of SARS-CoV-2 lineages in French Guiana in 2020-2021: 4 epidemic waves with cross-influences from Europe and South...

May 31, 2022

Gene-lifestyle interactions in the genomics of human complex traits

Eur J Hum Genet Laville V, Majarian T, Sung YJ, Schwander K, Feitosa MF, Chasman DI, Bentley AR, Rotimi CN, Cupples LA, de Vries PS,...

Mar 24, 2022

IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria

Full title: IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in...

Feb 22, 2022

Specificities and commonalities of carbapenemase producing Escherichia coli

Full title: Specificities and commonalities of carbapenemase producing Escherichia coli isolated in France from 2012 to 2015 mSystems...

Apr 13, 2021

Genomic insights into population history and biological adaptation in Oceania

Nature Choin J, Mendoza-Revilla J, Arauna LR, Cuadros-Espinoza S, Cassar O, Larena M, Min-Shan Ko A, Harmant C, Laurent R, Verdu P, Laval...

Jul 1, 2020

Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020

Euro Surveill Gámbaro F, Behillil S, Baidaliuk A, Donati F, Albert M, Alexandru A, Vanpeene M, Bizard M, Brisebarre A, Barbet M, Derrar...

May 31, 2020

Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde

Emerg Infect Dis Faye O, de Lourdes Monteiro M, Vrancken B, Prot M, Lequime S, Diarra M, Ndiaye O, Valdez T, Tavarez S, Ramos J, Lda...

Apr 20, 2020

Identification and molecular characterization of the first complete genome sequence

Scientific Reports Fernandez-Garcia MD, Simon-Loriere E, Kebe O, Sakuntabhai A, Ndiaye K Using a metagenomics approach, we have...

Feb 6, 2020

Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria

Nature Communications Marc Garcia-Garcera & Eduardo P. C. Rocha We test the hypothesis that the frequency and cost of extracellular...

Jan 24, 2020

Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes

Nucleic Acids Research Aude Bernheim, David Bikard, Marie Touchon, Eduardo P C Rocha Prokaryotes use CRISPR–Cas systems for adaptive...

Nov 7, 2018

Complete Genome Sequences of Bordetella pertussis Clinical Isolate FR5810

Microbiol Resour Announc Valérie Bouchez, Sarah Louise Baines, Sophie Guillot and Sylvain Brisse Microbiol Resour Announc. 2018 Nov;...