Phylogenetic background and habitat drive the genetic diversification of E. Coli
PLoS Genet Touchon M, Perrin A, de Sousa JAM, Vangchhia B, Burn S, O’Brien CL, Denamur E, Gordon D, Rocha EPC Escherichia coli is mostly...
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May 7, 2020
The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold
J Biol Chem Sheppard D, Berry JL, Denise R, Rocha EPC, Matthews S, Pelicic V Type IV filaments (T4F), which are helical assemblies of...
Apr 30, 2020
A Darwinian Uncertainty Principle
Systematic Biology Olivier Gascuel, Mike Steel Reconstructing ancestral characters and traits along a phylogenetic tree is central to...
Apr 28, 2020
Novel genome sequences of cell-fusing agent virus allow comparison of virus phylogeny
Virus Evol Baidaliuk A, Lequime S, Moltini-Conclois I, Dabo S, Dickson LB, Prot M, Duong V, Dussart P, Boyer S, Shi C, Matthijnssens J,...
Apr 20, 2020
Identification and molecular characterization of the first complete genome sequence
Scientific Reports Fernandez-Garcia MD, Simon-Loriere E, Kebe O, Sakuntabhai A, Ndiaye K Using a metagenomics approach, we have...
Apr 14, 2020
Efficiently Analysing Large Viral Data Sets in Computational Phylogenomics
Phylogenetics in the Genomic Era Zhukova A, Gascuel O, Duchene S, Ayres D, Lemey P, Baele G Viral evolutionary analyses are confronted...
Aug 1, 2019
PastView: a user-friendly interface to explore ancestral scenarios
BMC Evolutionary Biology François Chevenet, Guillaume Castel, Emmanuelle Jousselin, and Olivier Gascuel. BACKGROUND: Ancestral character...
Jul 18, 2019
Diversification of the type IV filament superfamily into machines for adhesion, protein secretion
Plos Biology Rémi Denise, Sophie S. Abby, Eduardo P. C. Rocha Processes of molecular innovation require tinkering and shifting in the...
May 23, 2019
A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios
Mol Biol Evol. Ishikawa SA, Zhukova A, Iwasaki W, Gascuel O. The reconstruction of ancestral scenarios is widely used to study the...
Apr 28, 2019
Distribution and asymptotic behavior of the phylogenetic transfer distance
Journal of Mathematical Biology Dávila Felipe M, Domelevo Entfellner JB, Lemoine F, Truszkowski J, Gascuel O. The transfer distance (TD)...
Apr 26, 2019
NGPhylogeny.fr: new generation phylogenetic services for non-specialists
Nucleic Acids Research Frédéric Lemoine, Damien Correia, Vincent Lefort, Olivia Doppelt-Azeroual, Fabien Mareuil, Sarah Cohen-Boulakia,...
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